Coordinate Systems and Transforms

Type: array

OME-Zarr Coordinate Systems and transforms.

Must contain a minimum of 1 items

All items must be unique

No Additional Items

Each item of this array must be:

root root items

root root items allOf coordinateTransformation
Type: object

OME-NGFF coordinate transformation.

root root items allOf item 0 allOf item 0
Type: object

root root items allOf item 0 allOf item 0 name
Type: string

root root items allOf item 0 allOf item 0 type
Type: string
root root items allOf item 0 allOf item 1

root root items allOf item 0 allOf item 1 oneOf identity
Type: object

root root items allOf item 0 allOf item 1 oneOf item 0 type
Type: const
Specific value: "identity"
root root items allOf item 0 allOf item 1 oneOf mapAxis
Type: object

Permute axes by name

root root items allOf item 0 allOf item 1 oneOf item 1 type
Type: const
Specific value: "mapAxis"

root root items allOf item 0 allOf item 1 oneOf item 1 mapAxis
Type: array of integer

An array of integers representing the new axis order as zero-based indices of the input axes.

 No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 1 mapAxis mapAxis items
Type: integer

root root items allOf item 0 allOf item 1 oneOf scale
Type: object

root root items allOf item 0 allOf item 1 oneOf item 2 oneOf item 0
Type: object

root root items allOf item 0 allOf item 1 oneOf item 2 oneOf item 0 path
Type: string

Path to a zarr array containing the scale factors.
root root items allOf item 0 allOf item 1 oneOf item 2 oneOf item 1
Type: object

root root items allOf item 0 allOf item 1 oneOf item 2 oneOf item 1 scale
Type: array of number
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 2 oneOf item 1 scale scale items
Type: number

Value must be strictly greater than 0

root root items allOf item 0 allOf item 1 oneOf item 2 type
Type: const
Specific value: "scale"
root root items allOf item 0 allOf item 1 oneOf translation
Type: object

root root items allOf item 0 allOf item 1 oneOf item 3 oneOf item 0
Type: object

root root items allOf item 0 allOf item 1 oneOf item 3 oneOf item 0 path
Type: string

Path to a zarr array containing the translation vectors.
root root items allOf item 0 allOf item 1 oneOf item 3 oneOf item 1
Type: object

root root items allOf item 0 allOf item 1 oneOf item 3 oneOf item 1 translation
Type: array of number
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 3 oneOf item 1 translation translation items
Type: number

root root items allOf item 0 allOf item 1 oneOf item 3 type
Type: const
Specific value: "translation"
root root items allOf item 0 allOf item 1 oneOf affine
Type: object

root root items allOf item 0 allOf item 1 oneOf item 4 oneOf item 0
Type: object

root root items allOf item 0 allOf item 1 oneOf item 4 oneOf item 0 path
Type: string

Path to a zarr array containing the affine matrix.
root root items allOf item 0 allOf item 1 oneOf item 4 oneOf item 1
Type: object

root root items allOf item 0 allOf item 1 oneOf item 4 oneOf item 1 affine
Type: array of array
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 4 oneOf item 1 affine affine items
Type: array of number
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 4 oneOf item 1 affine affine items affine items items
Type: number

root root items allOf item 0 allOf item 1 oneOf item 4 type
Type: const
Specific value: "affine"
root root items allOf item 0 allOf item 1 oneOf rotation
Type: object

root root items allOf item 0 allOf item 1 oneOf item 5 oneOf item 0
Type: object

root root items allOf item 0 allOf item 1 oneOf item 5 oneOf item 0 path
Type: string

Path to a zarr array containing the rotation matrix.
root root items allOf item 0 allOf item 1 oneOf item 5 oneOf item 1
Type: object

root root items allOf item 0 allOf item 1 oneOf item 5 oneOf item 1 rotation
Type: array of array
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 5 oneOf item 1 rotation rotation items
Type: array of number
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 5 oneOf item 1 rotation rotation items rotation items items
Type: number

root root items allOf item 0 allOf item 1 oneOf item 5 type
Type: const
Specific value: "rotation"
root root items allOf item 0 allOf item 1 oneOf inverseOf
Type: object

The inverse of another coordinate transformation.

root root items allOf item 0 allOf item 1 oneOf item 6 type
Type: const
Specific value: "inverseOf"

root root items allOf item 0 allOf item 1 oneOf item 6 transformation
Type: object

OME-NGFF coordinate transformation.

Same definition as items_allOf_i0
root root items allOf item 0 allOf item 1 oneOf bijection
Type: object

A pair of forward and inverse coordinate transformations.

root root items allOf item 0 allOf item 1 oneOf item 7 type
Type: const
Specific value: "bijection"

root root items allOf item 0 allOf item 1 oneOf item 7 forward
Type: object

OME-NGFF coordinate transformation.

Same definition as items_allOf_i0

root root items allOf item 0 allOf item 1 oneOf item 7 inverse
Type: object

OME-NGFF coordinate transformation.

Same definition as items_allOf_i0
root root items allOf item 0 allOf item 1 oneOf sequence
Type: object

A sequence of transformations

root root items allOf item 0 allOf item 1 oneOf item 8 type
Type: const
Specific value: "sequence"

root root items allOf item 0 allOf item 1 oneOf item 8 transformations
Type: array
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 8 transformations coordinateTransformation
Type: object

OME-NGFF coordinate transformation.

Same definition as items_allOf_i0
root root items allOf item 0 allOf item 1 oneOf byDimension
Type: object

A set of transformations applied independently to each dimension.

root root items allOf item 0 allOf item 1 oneOf item 9 type
Type: const
Specific value: "byDimension"

root root items allOf item 0 allOf item 1 oneOf item 9 transformations
Type: array
No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 9 transformations byDimensionTransformation
Type: object

Transformation used inside a byDimension transformation

root root items allOf item 0 allOf item 1 oneOf item 9 transformations transformations items allOf coordinateTransformation
Type: object

OME-NGFF coordinate transformation.

Same definition as items_allOf_i0
root root items allOf item 0 allOf item 1 oneOf item 9 transformations transformations items allOf item 1
Type: object

root root items allOf item 0 allOf item 1 oneOf item 9 transformations transformations items allOf item 1 input_axes
Type: array of string

Names of the input axes for this transformation.

 No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 9 transformations transformations items allOf item 1 input_axes input_axes items
Type: string

root root items allOf item 0 allOf item 1 oneOf item 9 transformations transformations items allOf item 1 output_axes
Type: array of string

Names of the output axes for this transformation.

 No Additional Items

Each item of this array must be:

root root items allOf item 0 allOf item 1 oneOf item 9 transformations transformations items allOf item 1 output_axes output_axes items
Type: string
root root items allOf item 0 allOf item 1 oneOf displacements
Type: object

root root items allOf item 0 allOf item 1 oneOf item 10 type
Type: const
Specific value: "displacements"

root root items allOf item 0 allOf item 1 oneOf item 10 path
Type: string

Path to the zarr array containing the displacement field.

root root items allOf item 0 allOf item 1 oneOf item 10 interpolation
Type: enum (of string) Default: "linear"

Interpolation method to use when applying the displacement field.

Must be one of:

  • "nearest"
  • "linear"
  • "cubic"
root root items allOf item 0 allOf item 1 oneOf coordinates
Type: object

root root items allOf item 0 allOf item 1 oneOf item 11 type
Type: const
Specific value: "coordinates"

root root items allOf item 0 allOf item 1 oneOf item 11 path
Type: string

Path to the zarr array containing the coordinate field.

root root items allOf item 0 allOf item 1 oneOf item 11 interpolation
Type: enum (of string) Default: "linear"

Interpolation method to use when applying the coordinate field.

Must be one of:

  • "nearest"
  • "linear"
  • "cubic"
root root items allOf item 1
Type: object

root root items allOf item 1 input
Type: string

root root items allOf item 1 output
Type: string